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The complete mitochondrial genomes of the yellowleg shrimp Farfantepenaeus californiensis and the blue shrimp Litopenaeus stylirostris (Crustacea: Decapoda).

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Peregrino-Uriarte AB, Varela-Romero A, Muhlia-Almazán A, Anduro-Corona I, Vega-Heredia S, Gutiérrez-Millán LE, De la Rosa-Vélez J, Yepiz-Plascencia G.
PMID: 20403743
Comp Biochem Physiol Part D Genomics Proteomics. 2009 Mar;4(1):45-53. doi: 10.1016/j.cbd.2008.10.003. Epub 2008 Nov 05.

Mitochondria play key roles in many cellular processes. Description of penaeid shrimp genes, including mitochondrial genomes are fairly recent and some are focusing on commercially important shrimp as the Pacific shrimp Litopenaeus vannamei that is being used for aquaculture...

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Peregrino-Uriarte AB, Varela-Romero A, Muhlia-Almazán A, et al. The complete mitochondrial genomes of the yellowleg shrimp Farfantepenaeus californiensis and the blue shrimp Litopenaeus stylirostris (Crustacea: Decapoda). Comp Biochem Physiol Part D Genomics Proteomics. 2008;4(1):45-53doi: 10.1016/j.cbd.2008.10.003.
Peregrino-Uriarte, A. B., Varela-Romero, A., Muhlia-Almazán, A., Anduro-Corona, I., Vega-Heredia, S., Gutiérrez-Millán, L. E., De la Rosa-Vélez, J., & Yepiz-Plascencia, G. (2009). The complete mitochondrial genomes of the yellowleg shrimp Farfantepenaeus californiensis and the blue shrimp Litopenaeus stylirostris (Crustacea: Decapoda). Comparative biochemistry and physiology. Part D, Genomics & proteomics, 4(1), 45-53. https://doi.org/10.1016/j.cbd.2008.10.003
Peregrino-Uriarte, Alma B, et al. "The complete mitochondrial genomes of the yellowleg shrimp Farfantepenaeus californiensis and the blue shrimp Litopenaeus stylirostris (Crustacea: Decapoda)." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 4,1 (2009): 45-53. doi: https://doi.org/10.1016/j.cbd.2008.10.003
Peregrino-Uriarte AB, Varela-Romero A, Muhlia-Almazán A, Anduro-Corona I, Vega-Heredia S, Gutiérrez-Millán LE, De la Rosa-Vélez J, Yepiz-Plascencia G. The complete mitochondrial genomes of the yellowleg shrimp Farfantepenaeus californiensis and the blue shrimp Litopenaeus stylirostris (Crustacea: Decapoda). Comp Biochem Physiol Part D Genomics Proteomics. 2009 Mar;4(1):45-53. doi: 10.1016/j.cbd.2008.10.003. Epub 2008 Nov 05. PMID: 20403743.
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Horse carboxylesterases: evidence for six CES1 and four families of CES genes on chromosome 3.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Holmes RS, Cox LA, Vandeberg JL.
PMID: 20403742
Comp Biochem Physiol Part D Genomics Proteomics. 2009 Mar;4(1):54-65. doi: 10.1016/j.cbd.2008.10.004. Epub 2008 Nov 05.

Carboxylesterases (CES) are responsible for the detoxification of a wide range of drugs and xenobiotics, and may contribute to cholesterol, fatty acid and lung surfactant metabolism. In this study, in silico methods were used to predict the amino acid...

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Holmes RS, Cox LA, Vandeberg JL. Horse carboxylesterases: evidence for six CES1 and four families of CES genes on chromosome 3. Comp Biochem Physiol Part D Genomics Proteomics. 2008;4(1):54-65doi: 10.1016/j.cbd.2008.10.004.
Holmes, R. S., Cox, L. A., & Vandeberg, J. L. (2009). Horse carboxylesterases: evidence for six CES1 and four families of CES genes on chromosome 3. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 4(1), 54-65. https://doi.org/10.1016/j.cbd.2008.10.004
Holmes, Roger S, et al. "Horse carboxylesterases: evidence for six CES1 and four families of CES genes on chromosome 3." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 4,1 (2009): 54-65. doi: https://doi.org/10.1016/j.cbd.2008.10.004
Holmes RS, Cox LA, Vandeberg JL. Horse carboxylesterases: evidence for six CES1 and four families of CES genes on chromosome 3. Comp Biochem Physiol Part D Genomics Proteomics. 2009 Mar;4(1):54-65. doi: 10.1016/j.cbd.2008.10.004. Epub 2008 Nov 05. PMID: 20403742; PMCID: PMC2916739.
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The dog: A powerful model for studying genotype-phenotype relationships.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Galibert F, André C.
PMID: 20483208
Comp Biochem Physiol Part D Genomics Proteomics. 2008 Mar;3(1):67-77. doi: 10.1016/j.cbd.2007.06.001. Epub 2007 Jun 07.

Within the last two years, series of studies have focused on the structure of the dog genome (Canis familiaris) and the characteristics of the dog population as it evolved since being domesticated from wolves about 14,000 years ago. In...

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Galibert F, André C. The dog: A powerful model for studying genotype-phenotype relationships. Comp Biochem Physiol Part D Genomics Proteomics. 2007;3(1):67-77doi: 10.1016/j.cbd.2007.06.001.
Galibert, F., & André, C. (2008). The dog: A powerful model for studying genotype-phenotype relationships. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 3(1), 67-77. https://doi.org/10.1016/j.cbd.2007.06.001
Galibert, Francis, and André, Catherine. "The dog: A powerful model for studying genotype-phenotype relationships." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 3,1 (2008): 67-77. doi: https://doi.org/10.1016/j.cbd.2007.06.001
Galibert F, André C. The dog: A powerful model for studying genotype-phenotype relationships. Comp Biochem Physiol Part D Genomics Proteomics. 2008 Mar;3(1):67-77. doi: 10.1016/j.cbd.2007.06.001. Epub 2007 Jun 07. PMID: 20483208.
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Cloning and characterization of myogenin from seabream (Sparus aurata) and analysis of promoter muscle specificity.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Codina M, Bian YH, Gutiérrez J, Du SJ.
PMID: 20483214
Comp Biochem Physiol Part D Genomics Proteomics. 2008 Mar;3(1):128-39. doi: 10.1016/j.cbd.2007.12.001. Epub 2007 Dec 23.

Myogenesis of skeletal muscles in vertebrates is controlled by extracellular signalling molecules together with intracellular transcription factors. Among the transcriptional factors, the members of the myogenic regulatory family, including MyoD, Myf5, Myogenin and MRF4, play important roles regulating skeletal...

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Codina M, Bian YH, Gutiérrez J, et al. Cloning and characterization of myogenin from seabream (Sparus aurata) and analysis of promoter muscle specificity. Comp Biochem Physiol Part D Genomics Proteomics. 2007;3(1):128-39doi: 10.1016/j.cbd.2007.12.001.
Codina, M., Bian, Y. H., Gutiérrez, J., & Du, S. J. (2008). Cloning and characterization of myogenin from seabream (Sparus aurata) and analysis of promoter muscle specificity. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 3(1), 128-39. https://doi.org/10.1016/j.cbd.2007.12.001
Codina, Marta, et al. "Cloning and characterization of myogenin from seabream (Sparus aurata) and analysis of promoter muscle specificity." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 3,1 (2008): 128-39. doi: https://doi.org/10.1016/j.cbd.2007.12.001
Codina M, Bian YH, Gutiérrez J, Du SJ. Cloning and characterization of myogenin from seabream (Sparus aurata) and analysis of promoter muscle specificity. Comp Biochem Physiol Part D Genomics Proteomics. 2008 Mar;3(1):128-39. doi: 10.1016/j.cbd.2007.12.001. Epub 2007 Dec 23. PMID: 20483214.
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Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Kortner TM, Rocha E, Silva P, Castro LF, Arukwe A.
PMID: 20483219
Comp Biochem Physiol Part D Genomics Proteomics. 2008 Sep;3(3):205-18. doi: 10.1016/j.cbd.2008.04.001. Epub 2008 Apr 23.

Previous studies have suggested that androgens may play an integral role in early oocyte development in fish. This study evaluated the effects of androgens (11-ketotestosterone: 11-KT and testosterone: T) on gene expression patterns and growth of cod previtellogenic oocytes....

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Kortner TM, Rocha E, Silva P, et al. Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes. Comp Biochem Physiol Part D Genomics Proteomics. 2008;3(3):205-18doi: 10.1016/j.cbd.2008.04.001.
Kortner, T. M., Rocha, E., Silva, P., Castro, L. F., & Arukwe, A. (2008). Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 3(3), 205-18. https://doi.org/10.1016/j.cbd.2008.04.001
Kortner, Trond M, et al. "Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 3,3 (2008): 205-18. doi: https://doi.org/10.1016/j.cbd.2008.04.001
Kortner TM, Rocha E, Silva P, Castro LF, Arukwe A. Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes. Comp Biochem Physiol Part D Genomics Proteomics. 2008 Sep;3(3):205-18. doi: 10.1016/j.cbd.2008.04.001. Epub 2008 Apr 23. PMID: 20483219.
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Temporal expression of two cytochrome P450 aromatase isoforms during development in Oreochromis mossambicus, in association with histological development.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Esterhuyse MM, Helbing CC, van Wyk JH.
PMID: 20483224
Comp Biochem Physiol Part D Genomics Proteomics. 2008 Dec;3(4):297-306. doi: 10.1016/j.cbd.2008.08.003. Epub 2008 Sep 09.

Oreochromis mossambicus is targeted as a sentinel species for assay development to detect disruption of estrogen-dependent pathways in Southern Africa. Aromatase--an enzyme encoded by either of two cytochrome P450 19 (cyp19) genes in O. mossambicus is the only enzyme...

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Esterhuyse MM, Helbing CC, van Wyk JH. Temporal expression of two cytochrome P450 aromatase isoforms during development in Oreochromis mossambicus, in association with histological development. Comp Biochem Physiol Part D Genomics Proteomics. 2008;3(4):297-306doi: 10.1016/j.cbd.2008.08.003.
Esterhuyse, M. M., Helbing, C. C., & van Wyk, J. H. (2008). Temporal expression of two cytochrome P450 aromatase isoforms during development in Oreochromis mossambicus, in association with histological development. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 3(4), 297-306. https://doi.org/10.1016/j.cbd.2008.08.003
Esterhuyse, M M, et al. "Temporal expression of two cytochrome P450 aromatase isoforms during development in Oreochromis mossambicus, in association with histological development." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 3,4 (2008): 297-306. doi: https://doi.org/10.1016/j.cbd.2008.08.003
Esterhuyse MM, Helbing CC, van Wyk JH. Temporal expression of two cytochrome P450 aromatase isoforms during development in Oreochromis mossambicus, in association with histological development. Comp Biochem Physiol Part D Genomics Proteomics. 2008 Dec;3(4):297-306. doi: 10.1016/j.cbd.2008.08.003. Epub 2008 Sep 09. PMID: 20483224.
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CBP enters the world of 'omics.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Mommsen TP, Walsh PJ.
PMID: 20483226
Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):1-2. doi: 10.1016/j.cbd.2005.08.001. Epub 2005 Sep 28.

No abstract available.

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Mommsen TP, Walsh PJ. CBP enters the world of 'omics. Comp Biochem Physiol Part D Genomics Proteomics. 2005;1(1):1-2doi: 10.1016/j.cbd.2005.08.001.
Mommsen, T. P., & Walsh, P. J. (2006). CBP enters the world of 'omics. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 1(1), 1-2. https://doi.org/10.1016/j.cbd.2005.08.001
Mommsen, Thomas P, and Walsh, Patrick J. "CBP enters the world of 'omics." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 1,1 (2006): 1-2. doi: https://doi.org/10.1016/j.cbd.2005.08.001
Mommsen TP, Walsh PJ. CBP enters the world of 'omics. Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):1-2. doi: 10.1016/j.cbd.2005.08.001. Epub 2005 Sep 28. PMID: 20483226.
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Structural comparison of promoter and coding sequence of type I collagen alpha 1 chain gene duplicates between zebrafish and flounder/fugu lineages.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Suzuki T, Srivastava AS, Hashimoto H, Kurokawa T.
PMID: 20483231
Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):20-7. doi: 10.1016/j.cbd.2005.07.001. Epub 2005 Sep 13.

Alpha 1 chain (Colalpha1(I)) and alpha 2 chain (Colalpha2(I)) are universal components of type I collagen in tetrapods, but rainbow trout (Oncorhynchus mykiss) and zebrafish (Danio rerio) have a third: alpha 3 chain (Colalpha3(I)). This study tests whether Colalpha3(I)...

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Suzuki T, Srivastava AS, Hashimoto H, et al. Structural comparison of promoter and coding sequence of type I collagen alpha 1 chain gene duplicates between zebrafish and flounder/fugu lineages. Comp Biochem Physiol Part D Genomics Proteomics. 2005;1(1):20-7doi: 10.1016/j.cbd.2005.07.001.
Suzuki, T., Srivastava, A. S., Hashimoto, H., & Kurokawa, T. (2006). Structural comparison of promoter and coding sequence of type I collagen alpha 1 chain gene duplicates between zebrafish and flounder/fugu lineages. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 1(1), 20-7. https://doi.org/10.1016/j.cbd.2005.07.001
Suzuki, Tohru, et al. "Structural comparison of promoter and coding sequence of type I collagen alpha 1 chain gene duplicates between zebrafish and flounder/fugu lineages." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 1,1 (2006): 20-7. doi: https://doi.org/10.1016/j.cbd.2005.07.001
Suzuki T, Srivastava AS, Hashimoto H, Kurokawa T. Structural comparison of promoter and coding sequence of type I collagen alpha 1 chain gene duplicates between zebrafish and flounder/fugu lineages. Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):20-7. doi: 10.1016/j.cbd.2005.07.001. Epub 2005 Sep 13. PMID: 20483231.
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Diversity of the pufferfish Takifugu rubripes fast skeletal myosin heavy chain genes.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Watabe S, Ikeda D.
PMID: 20483232
Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):28-34. doi: 10.1016/j.cbd.2005.12.001. Epub 2006 Feb 02.

Myosin is a highly conserved, ubiquitous actin-based molecular motor that is distributed as diverse as from prokaryotes to mammalian tissues. Among various types in the myosin family proteins, class II, also called sarcomeric, myosin is a classical, conventional molecule...

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Watabe S, Ikeda D. Diversity of the pufferfish Takifugu rubripes fast skeletal myosin heavy chain genes. Comp Biochem Physiol Part D Genomics Proteomics. 2006;1(1):28-34doi: 10.1016/j.cbd.2005.12.001.
Watabe, S., & Ikeda, D. (2006). Diversity of the pufferfish Takifugu rubripes fast skeletal myosin heavy chain genes. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 1(1), 28-34. https://doi.org/10.1016/j.cbd.2005.12.001
Watabe, Shugo, and Ikeda, Daisuke. "Diversity of the pufferfish Takifugu rubripes fast skeletal myosin heavy chain genes." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 1,1 (2006): 28-34. doi: https://doi.org/10.1016/j.cbd.2005.12.001
Watabe S, Ikeda D. Diversity of the pufferfish Takifugu rubripes fast skeletal myosin heavy chain genes. Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):28-34. doi: 10.1016/j.cbd.2005.12.001. Epub 2006 Feb 02. PMID: 20483232.
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Distribution of tetrodotoxin in the xanthid crab (Atergatis floridus) collected in the coastal waters of Kanagawa and Wakayama Prefectures.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Saito T, Kohama T, Ui K, Watabe S.
PMID: 20483247
Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):158-62. doi: 10.1016/j.cbd.2005.09.001. Epub 2005 Oct 28.

The objective of this investigation was to study the distribution of tetrodotoxin (TTX) in the xanthid crab (Atergatis floridus) found in the coastal waters of Kanagawa and Wakayama Prefectures of Japan using mouse assay methods. We used 32 crab...

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Saito T, Kohama T, Ui K, et al. Distribution of tetrodotoxin in the xanthid crab (Atergatis floridus) collected in the coastal waters of Kanagawa and Wakayama Prefectures. Comp Biochem Physiol Part D Genomics Proteomics. 2005;1(1):158-62doi: 10.1016/j.cbd.2005.09.001.
Saito, T., Kohama, T., Ui, K., & Watabe, S. (2006). Distribution of tetrodotoxin in the xanthid crab (Atergatis floridus) collected in the coastal waters of Kanagawa and Wakayama Prefectures. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 1(1), 158-62. https://doi.org/10.1016/j.cbd.2005.09.001
Saito, Toshio, et al. "Distribution of tetrodotoxin in the xanthid crab (Atergatis floridus) collected in the coastal waters of Kanagawa and Wakayama Prefectures." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 1,1 (2006): 158-62. doi: https://doi.org/10.1016/j.cbd.2005.09.001
Saito T, Kohama T, Ui K, Watabe S. Distribution of tetrodotoxin in the xanthid crab (Atergatis floridus) collected in the coastal waters of Kanagawa and Wakayama Prefectures. Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):158-62. doi: 10.1016/j.cbd.2005.09.001. Epub 2005 Oct 28. PMID: 20483247.
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Guanylyl cyclases in the tropical land crab, Gecarcinus lateralis: Cloning of soluble (NO-sensitive and -insensitive) and membrane receptor forms.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Lee SG, Kim HW, Mykles DL.
PMID: 20483305
Comp Biochem Physiol Part D Genomics Proteomics. 2007 Dec;2(4):332-44. doi: 10.1016/j.cbd.2007.08.001. Epub 2007 Aug 17.

cDNAs encoding three guanylyl cyclases (GCs), which catalyze the production cGMP from GTP, were cloned from the blackback land crab, Gecarcinus lateralis: the beta subunit of a NO-sensitive soluble GC (Gl-GC-Ibeta; 2380 bp; 603 amino acids; 68,435 Da), a...

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Lee SG, Kim HW, Mykles DL. Guanylyl cyclases in the tropical land crab, Gecarcinus lateralis: Cloning of soluble (NO-sensitive and -insensitive) and membrane receptor forms. Comp Biochem Physiol Part D Genomics Proteomics. 2007;2(4):332-44doi: 10.1016/j.cbd.2007.08.001.
Lee, S. G., Kim, H. W., & Mykles, D. L. (2007). Guanylyl cyclases in the tropical land crab, Gecarcinus lateralis: Cloning of soluble (NO-sensitive and -insensitive) and membrane receptor forms. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 2(4), 332-44. https://doi.org/10.1016/j.cbd.2007.08.001
Lee, Sung Gu, et al. "Guanylyl cyclases in the tropical land crab, Gecarcinus lateralis: Cloning of soluble (NO-sensitive and -insensitive) and membrane receptor forms." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 2,4 (2007): 332-44. doi: https://doi.org/10.1016/j.cbd.2007.08.001
Lee SG, Kim HW, Mykles DL. Guanylyl cyclases in the tropical land crab, Gecarcinus lateralis: Cloning of soluble (NO-sensitive and -insensitive) and membrane receptor forms. Comp Biochem Physiol Part D Genomics Proteomics. 2007 Dec;2(4):332-44. doi: 10.1016/j.cbd.2007.08.001. Epub 2007 Aug 17. PMID: 20483305.
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Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA.

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Abernathy JW, Xu DH, Li P, Klesius P, Kucuktas H, Liu Z.
PMID: 20403762
Comp Biochem Physiol Part D Genomics Proteomics. 2009 Sep;4(3):179-86. doi: 10.1016/j.cbd.2009.02.004. Epub 2009 Mar 09.

Polyadenylation of eukaryotic transcripts is usually restricted to mRNA, providing transcripts with stability from degradation by nucleases. Conversely, an RNA degradation pathway can be signaled through poly (A) tailing in prokaryotic, archeal, and organellar biology. Recently polyadenylated transcripts have...

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Abernathy JW, Xu DH, Li P, et al. Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA. Comp Biochem Physiol Part D Genomics Proteomics. 2009;4(3):179-86doi: 10.1016/j.cbd.2009.02.004.
Abernathy, J. W., Xu, D. H., Li, P., Klesius, P., Kucuktas, H., & Liu, Z. (2009). Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA. Comparative biochemistry and physiology. Part D, Genomics & proteomics, 4(3), 179-86. https://doi.org/10.1016/j.cbd.2009.02.004
Abernathy, Jason W, et al. "Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA." Comparative biochemistry and physiology. Part D, Genomics & proteomics vol. 4,3 (2009): 179-86. doi: https://doi.org/10.1016/j.cbd.2009.02.004
Abernathy JW, Xu DH, Li P, Klesius P, Kucuktas H, Liu Z. Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA. Comp Biochem Physiol Part D Genomics Proteomics. 2009 Sep;4(3):179-86. doi: 10.1016/j.cbd.2009.02.004. Epub 2009 Mar 09. PMID: 20403762.
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